Data analysis plugins¶
- BLAST
- BURST
- Codon usage
- Field breakdown
- Gene Presence
- Genome comparator
- Analysis using defined loci
- Analysis using annotated reference genome
- Include in identifiers fieldset
- Reference genome fieldset
- Parameters/options fieldset
- Distance matrix calculation fieldset
- Alignments fieldset
- Core genome analysis fieldset
- Filter fieldset
- Understanding the output
- Analysis using defined loci
- Analysis using annotated reference genome
- Include in identifiers fieldset
- Reference genome fieldset
- Parameters/options fieldset
- Distance matrix calculation fieldset
- Alignments fieldset
- Core genome analysis fieldset
- Filter fieldset
- Understanding the output
- GrapeTree
- In silico PCR
- Interactive Tree of Life (iTOL)
- Locus explorer
- Microreact
- PhyloViz
- Polymorphisms
- Species identification
- Sequence bin breakdown
- Two field breakdown
- Unique combinations