The Polymorphisms plugin generates a Locus Explorer polymorphic site analysis on the alleles designated in an isolate dataset following a query.
The analysis can be accessed by selecting the ‘Analysis’ section on the main contents page.
Jump to the ‘Breakdown’ category, follow the link to Polymorphisms, then click ‘Launch Polymorphisms’.
The analysis is accessed by clicking the ‘Polymorphic sites’ button in the Breakdown list at the bottom of a results table following a query.
Select the locus that you would like to analyse from the list.
A schematic of the locus is generated showing the polymorphic sites. A full description of this can be found in the Locus Explorer polymorphic site analysis section.