#BIGSdb site-specific configuration file #Set the attributes in this file specific to your system ###GENERAL#### #tmp_dir: Location of web accessible temporary directory #secure_tmp_dir: Location of web-inaccessible temporary directory #prefs_db: Name of preference database #auth_db: Name of authentication database tmp_dir=/home/httpd/pubmlst.org/tmp secure_tmp_dir=/var/tmp prefs_db=bigsdb_prefs auth_db=bigsdb_auth ####EMBOSS#### #Path of directory containing EMBOSS programs - used for sequence alignment in allele query emboss_path=/usr/software/EMBOSS/EMBOSS/emboss/bin ####BLAST BIN DIRECTORY #Path of directory containing BLAST (blastall and formatdb) programs blast_path=/usr/local/bin ####MUSCLE##### #Path of muscle executable muscle_path=/usr/bin/muscle ##REFERENCE DB# #Set to reference dbase name if you have set up a local reference database. #You will need to run the accompaning getrefs.pl script regularly to #keep this updated (unless you're mirroring another system) refdb=refs #CHARTDIRECTOR#### #Set to 1 if the chartdirector library is installed chartdirector=1