Data analysis plugins

• BLAST
  • Include in results table fieldset
  • Parameters fieldset
  • No matches
  • Filter fieldset
• BURST
• Codon usage
• Field breakdown
  • Maps
  • Pie charts
  • Bar charts
  • Line charts
  • Summary tables
  • Exporting allele sequences
• Gene Presence
  • Pivot Table
  • Heatmap
• GeneScanner
• Genome comparator
  • Analysis using defined loci
  • Analysis using annotated reference genome
  • Include in identifiers fieldset
  • Reference genome fieldset
  • Parameters/options fieldset
  • Distance matrix calculation fieldset
  • Alignments fieldset
  • Core genome analysis fieldset
  • Filter fieldset
  • Understanding the output
    • Distance matrix
    • Unique strains
• GrapeTree
• In silico PCR
• Interactive Tree of Life (iTOL)
• Kaptive
• Kleborate
• LINtree
• LINvis
• Locus explorer
  • Polymorphic site analysis
  • Codon usage
  • Aligned translations
• Microreact
• PhyloViz
• PlasmidFinder
• Polymorphisms
• Species identification
• ReporTree
• Reports
• Sequence bin breakdown
• SNPsites
• Two field breakdown
• Unique combinations