Contig export

The contig export plugin can be accessed by expanding the ‘Export’ section and clicking the ‘Contigs’ link in the contents page of isolate databases.

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Alternatively, it can be accessed following a query by clicking the ‘Contigs’ button in the Export section at the bottom of the results table.

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Select the isolates for which you wish to export contig data for. In databases with a large number of isolates you will need to enter the id numbers rather than select from a list. If the export function was accessed following a query, isolates returned in the query will be pre-selected.

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Press submit.

A table will be produced with download links. Clicking these will produce the contigs in FASTA, EMBL, or Genbank format.

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You can also download all the data in a tar.gz file by clicking the appropriate ‘Batch download’ link for the format you want.

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