BIGSdb
latest
  • Concepts and terms
  • BIGSdb dependencies
  • Installation and configuration of BIGSdb
  • Database setup
  • Administrator’s guide
  • Curator’s guide
  • Curating data submitted via the automated submission system
  • Offline curation tools
  • Definition downloads
  • Data records
  • Querying data
  • User projects
  • Private records
  • Data analysis plugins
    • BLAST
    • BURST
    • Codon usage
    • Field breakdown
    • Gene Presence
    • Genome comparator
    • GrapeTree
    • In silico PCR
    • Interactive Tree of Life (iTOL)
    • Locus explorer
    • Microreact
    • PhyloViz
    • Polymorphisms
    • Species identification
    • Sequence bin breakdown
    • Two field breakdown
    • Unique combinations
  • Data export plugins
  • Submitting data using the submission system
  • RESTful Application Programming Interface (API)
  • Frequently asked questions (FAQs)
  • Appendix
  • Database schema
BIGSdb
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  • Data analysis plugins
  • Edit on GitHub

Data analysis plugins¶

  • BLAST
    • Include in results table fieldset
    • Parameters fieldset
    • No matches
    • Filter fieldset
  • BURST
  • Codon usage
  • Field breakdown
    • Maps
    • Pie charts
    • Bar charts
    • Line charts
    • Summary tables
    • Exporting allele sequences
  • Gene Presence
    • Pivot Table
    • Heatmap
  • Genome comparator
    • Analysis using defined loci
    • Analysis using annotated reference genome
    • Include in identifiers fieldset
    • Reference genome fieldset
    • Parameters/options fieldset
    • Distance matrix calculation fieldset
    • Alignments fieldset
    • Core genome analysis fieldset
    • Filter fieldset
    • Understanding the output
      • Distance matrix
      • Unique strains
  • GrapeTree
  • In silico PCR
  • Interactive Tree of Life (iTOL)
  • Locus explorer
    • Polymorphic site analysis
    • Codon usage
    • Aligned translations
  • Microreact
  • PhyloViz
  • Polymorphisms
  • Species identification
  • Sequence bin breakdown
  • Two field breakdown
  • Unique combinations
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