BIGSdb
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  • Concepts and terms
  • BIGSdb dependencies
  • Installation and configuration of BIGSdb
  • Database setup
  • Administrator’s guide
  • Curator’s guide
  • Curating data submitted via the automated submission system
  • Offline curation tools
  • Definition downloads
  • Data records
  • Querying data
    • Querying sequences to determine allele identity
    • Querying multiple sequences to identify allele identities
    • Searching for specific allele definitions
    • Browsing scheme profile definitions
    • Querying scheme profile definitions
    • Identifying allelic profile definitions
    • Batch profile queries
    • Investigating allele differences
    • Browsing isolate data
    • Querying isolate data
    • Bookmarking an isolate query
    • Retrieving isolates by linked publication
    • User-configurable options
  • User projects
  • Private records
  • Data analysis plugins
  • Data export plugins
  • Submitting data using the submission system
  • RESTful Application Programming Interface (API)
  • Frequently asked questions (FAQs)
  • Appendix
  • Database schema
BIGSdb
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  • Querying data
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Querying data¶

  • Querying sequences to determine allele identity
    • Querying whole genome data
  • Querying multiple sequences to identify allele identities
  • Searching for specific allele definitions
    • General (all loci) sequence attribute search
    • Locus-specific sequence attribute search
  • Browsing scheme profile definitions
  • Querying scheme profile definitions
  • Identifying allelic profile definitions
  • Batch profile queries
  • Investigating allele differences
    • Sequence similarity
    • Sequence comparison
  • Browsing isolate data
  • Querying isolate data
    • Query by allele designation/scheme field
    • Query by allele designation count
    • Query by allele designation status
    • Query by annotation status
    • Query by sequence bin size and number of contigs
    • Query by sequence tag count
    • Query by tagged sequence status
    • Query by list of attributes
    • Query filters
    • Querying by allelic profile
  • Bookmarking an isolate query
  • Retrieving isolates by linked publication
  • User-configurable options
    • General options
    • Main results table
    • Isolate record display
    • Provenance field display
    • Query filters
    • Modifying locus and scheme display options
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© Copyright 2014-2022, Keith Jolley. Revision c3fe94e0.

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