Querying data

• Querying sequences to determine allele identity
  • Querying whole genome data
• Querying multiple sequences to identify allele identities
• Searching for specific allele definitions
  • General (all loci) sequence attribute search
  • Locus-specific sequence attribute search
• Browsing scheme profile definitions
• Querying scheme profile definitions
• Identifying allelic profile definitions
• Batch profile queries
• Investigating allele differences
  • Sequence similarity
  • Sequence comparison
• Browsing isolate data
• Querying isolate data
  • Query by allele designation/scheme field
  • Query by allele designation count
  • Query by allele designation status
  • Query by sequence tag count
  • Query by tagged sequence status
  • Query by list of attributes
  • Query filters
  • Querying by allelic profile
• Bookmarking an isolate query
• Retrieving isolates by linked publication
• User-configurable options
  • General options
  • Main results table
  • Isolate record display
  • Provenance field display
  • Query filters
  • Modifying locus and scheme display options