The Polymorphisms plugin generates a Locus Explorer polymorphic site analysis on the alleles designated in an isolate dataset following a query.
The analysis is accessed by clicking the ‘Polymorphic sites’ button in the Breakdown list at the bottom of a results table following a query.
Select the locus that you would like to analyse from the list.
A schematic of the locus is generated showing the polymorphic sites. A full description of this can be found in the Locus Explorer polymorphic site analysis section.